CMS-Flow:Features: Difference between revisions

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==Salinity Transport==
In many estuaries, the density gradients caused by spatial variations in salinity can be an important driving force in the circulation. Salinity is also a key water quality variable in estuaries, since it affects the chemical and biological processes. Salinity is simulated in the Coastal Modeling System (CMS) in a depth-averaged sense. This means that the estuary or body of water is assumed to be well mixed vertically and the salinity is constant over the water column.
The salinity transport equation is solved with an explicit, finite volume method. The advection term is discretized with upwind scheme, and the diffusion term is discretized with the standard central difference scheme.
The CMS-Flow salinity cards are listed in the table below.
<br style="clear:both" />
{| border="1"
! Card !! Arguments !! Description !! Versions
|-
| CALC_SALINITY || ON <nowiki>|</nowiki> OFF || Turns salinity on or off || >=v3.75
|-
| SALT_OUT_TIMES_LIST || integer || Index of times list of output times || >=v3.75
|-
| SALINITY_IC || real || Specifies the initial salinity value in ppt for the whole computational domain || >=v3.75
|-
| SALINITY_IC_ASCII || character || Specifies the file name of a scatter set file (*.pts) containing the coordiantes and initial salinity values to be interpolated using the Laplacian interpolation || >=4.0
|}
Additional information on Salinity Transport in CMS-Flow can be found [[CMS-Flow:Salinity_Calculation|'''here''']].


='''Other Processes'''=
='''Other Processes'''=

Revision as of 16:08, 16 January 2011

Global Forcing

There are two main types of global forcing available in CMS-Flow, wind and wave. Global forcing means that the forcing is applied on a cell-by-cell nature, rather than forcing along a boundary.

Wind Forcing

Wind Curve

SMS 10.1
SMS 10.1

Temporally varying, spatially constant winds are input in CMS in the Wind Section of the CMS-Flow Model Control Window. To add wind forcing to a current CMS-Flow project click on CMS-Flow | Model Control and then on the Wind/Wave tab. Activate wind forcing by clicking on the Include Wind check box. Winds may be imported using an *.m2w file or by specifying a curve for wind speed and direction. To specify a curve for each click on the respective box which says Curve undefined which will open the XY Series Editor. The time series may be manually entered, copied or imported from an *.xys file in the XY Series Editor.


Spatially Variable Wind and Atmospheric Pressure CMS-Flow V4.0 and higher have the option to use spatially variable wind and atmospheric pressure forcing. Currently, this feature is specified in the advanced card section using the cards listed in the table below.

CMS-Flow cards related to wind

Card Arguments Type
WIND_OUT_TIMES_LIST Id number of output times list integer
WIND_DRAG_COEFFICIENT kappa in Hsu (1988) (default 0.4) real
WIND_INPUT_CURVE Name of model parameter file followed wind curve path character
ANEMOMETER_HEIGHT Height of wind speeds meter
OCEANWEATHER_WIND_FILE Name of Oceanweather, Inc. wind file (*.win) character
OCEANWEATHER_PRES_FILE Name of Oceanweather, Inc. pressure file (*.pre) character
OCEANWEATHER_XY_FILE Name of Oceanweather, Inc. coordinate file (*.xy) character
WIND_PRESSURE_FLEET_FILE Name of fleet wind and pressure file character
WIND_PRESSURE_GRID_PARAM Nwlat,Nwlon,wLatMax,wLonMin,wLatInc,wLonInc integer and real
WIND_PRESSURE_TIME_INCREMENT wTimeInc real

Wave Forcing

Temporally and spatially varying.

  • Wave forcing is generally provided by the user selecting to use the Steering Module within SMS. The mapping of wave data from wave grid to flow grid is automated during the course of the steering process.
  • If a choice is made not to use the steering process, the user must provide several datasets of information which has been mapped to the flow grid geometery.
    • Radiation stress gradient
    • Wave height
    • Wave period
    • Wave direction
    • Wave dissipation

CMS-Flow cards related to wave forcing (one-way coupling)

Card Arguments Type
WAVE_RSTRESS_DATASET "File name" "Dataset path" character
WAVE_HEIGHT_DATASET "File name" "Dataset path" character
WAVE_PERIOD_DATASET "File name" "Dataset path" character
WAVE_DIRECTION_DATASET "File name" "Dataset path" character
WAVE_DISSIPATION_DATASET "File name" "Dataset path" character

Other Processes

Bottom Friction

SMS Project Explorer showing CMS-Flow project.

The bottom friction parameter (related to Manning ) is spatially varying (cell-specific) over the grid domain. The default value upon grid creation is 0.025. At times a user may desire to represent locations where added friction is needed due to structures or increased turbulence due to sharp changes in current speed. More information on using this feature of CMS-Flow can be found here.


Card Arguments Default Range Description Versions
USE_WALL_FRICTION CHARACTER ON ON | OFF Turns on or off wall friction >=3.5
MANNING_N_DATASET CHARACTER CHARACTER [<grid file>] [<grid name>//"Datasets/ManningsN"] none Grid file name and dataset path for the input Manning's n dataset >=v3.5
MANNING_N_CONSTANT real number none 0.001-0.5 Specifies input Manning n dataset >=v3.5
WAVE-CURRENT_MEAN_STRESS character W09 W09 | DATA2 | DATA13 | F85 | HT95 Defines the model used for calculating the mean bottom shear stress used in hydro >=4.0

Hard Bottom

SMS Project Explorer showing Hard bottom dataset

Hard Bottom is a morphologic constraint that provides the capability to simulate mixed bottom types within a single simulation. This cell-specific feature limits the erodibility of the constrained cells down to a specified depth below the water surface. More information on the use of hard bottom within the SMS can be found here.


CMS-Flow Model Control window showing the location where the hard bottom dataset is specified.


Variable D50

When sediment transport and morphology change are activated, sometimes it may be desired to designate areas of the grid to have a certain grain size. This cell-specific parameter allows each cell to take on the characteristics of a certain sediment grain size. More information on the use of variable grain size (D50) can be found here.

Eddy Viscosity

Eddy Viscosity in CMS-Flow is not a user definable parameter. A description of the advanced cards related to eddy viscosity is shown in the table below.


Card Arguments Default Range Description Versions
TURBULENCE_MODEL CHARACTER SUBGRID SUBGRID |FALCONER| PARABOLIC | MIXING-LENGTH Specifies the turbulence model used >=3.5
EDDY_VISCOSITY_CONSTANT REAL 1.0E-6 >=1.0E-6 Constant contribution or base value of eddy viscosity >=3.5
EDDY_VISCOSITY_BOTTOM REAL 0.0667 0.01-0.2 Coefficient related to the contribution to eddy viscosity from the bottom shear >=3.5
EDDY_VISCOSITY_HORIZONTAL REAL 0.4 0.2-0.6 Coefficient related to the contribution to eddy viscosity from horizontal velocity gradients >=3.5
EDDY_VISCOSITY_WAVE REAL 0.5 0.2-1.0 Coefficient related to the wave bottom friction contribution to eddy viscosity >=4.0
EDDY_VISCOSITY_BREAKING REAL 0.05 0.04-0.08 Coefficient related to the wave breaking contribution to eddy viscosity >=4.0

More information can be found here.

Other Features

Parallelization with OpenMP

Both Intel and AMD processors now are shipping chips with multiple cores/processors (henceforth referred to as "processors") available. CMS-Flow is now configured to make use of these extra processes that are available on newer machines.

Additional information on using Multiple Processors with CMS-Flow can be found here.

Advanced Output

The following advanced cards have been added to CMS v4.0 and higher for outputting additional output information, ASCII file output, and more.

Card Arguments Description Default value
XMDF_COMPRESSION ON | OFF Compresses the h5 file by a factor of about 7 OFF
WAVE_OUT_TIMES_LIST integer Output time series id 0
EDDY_OUT_TIMES_LIST integer Output time series id 0
VISC_OUT_TIMES_LIST integer Output time series id 0
STRESS_OUT_TIMES_LIST integer Output time series id 0
BED_SHEAR_STRESS_OUT_TIMES_LIST integer Output time series id 0
GLOBAL_TECPLOT_FILES ON | OFF Outputs Tecplot ASCII files OFF
GLOBAL_SUPER_FILES ON | OFF Outputs Tecplot ASCII files OFF
GLOBAL_STATISTICS [t0] [tn] [dt] Calculates global statistics if specified none
FLOW_STATISTICS [t0] [tn] [dt] Calculates flow statistics if specified none
SEDIMENT_STATISTICS [t0] [tn] [dt] Calculates sediment statistics if specified none
SALINITY_STATISTICS [t0] [tn] [dt] Calculates salinity statistics if specified none

Matrix solver

The four different solvers implemented in the implicit model are the Gauss-Seidel, Gauss-Seidel with Successive-Over-Relaxation, BICGSTAB, and GMRES. The same solver is applied to flow, sediment and salinity. The default solver is the GMRES. The solver may be changed using the advanced card in the table below.

Card Arguments Description Default value
SOLVER_TYPE GAUSS-SEIDEL | GAUSS-SEIDEL-SOR | BICGSTAB | GMRES Determines the numerical solver used GMRES
HYDRO_MAX_ITER integer Maximum number of iterations (outer loop) for the hydrodynamics 20
SEDIMENT_MAX_ITER integer Maximum number of iterations (outer loop) for the sediment transport 20
SALINITY_MAX_ITER integer Maximum number of iterations (outer loop) for the salinity transport 20

Advection scheme

As in the case of the solver, the same advection scheme is applied for the flow, sediment and salinity transport equations. There are three choices for advection schemes with upwinding in the implicit model: hybrid, exponential and HLPA. The hybrid scheme is fast but is the most diffusive. The exponential scheme is based on the 1D analytical solution to an advection-diffusion equation and produces very stable results. The HLPA is very stable and non-diffusive, but requires slightly more computational time. For most applications, the exponential scheme is recommended and is set as the default. The advection scheme may be change using the advanced card

Card Arguments Description Default value
ADVECTION_SCHEME HYBRID | EXPONENTIAL | HLPA Determines the advection scheme EXPONENTIAL

Units of Measurement

Variable Units Symbol
Water Surface Elevation meters
Current Velocity meters per second
Flow Rate cubic meters per second
Salinity Concentration parts per thousand
Sediment Concentration kilogram per meter cubed
Sediment Transport meter squared per second
Bed Shear Stress kilogram per meter per second squared

CMS-Flow